PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00154.110
Common NameJCGZ_23535, LOC105647731
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 214aa    MW: 24524.2 Da    PI: 4.4519
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00154.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1882131355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr ++ +g+++AeIrd + ng   r++lg+f+ ae+Aa a+++a+++++g
  Jcr4S00154.110  82 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDKAEDAALAYDQAALAMRG 131
                     9*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-3681145IPR001471AP2/ERF domain
PROSITE profilePS5103222.48481139IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2282140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3082140IPR001471AP2/ERF domain
PfamPF008471.3E-1282131IPR001471AP2/ERF domain
CDDcd000184.57E-3082140No hitNo description
PRINTSPR003675.4E-138293IPR001471AP2/ERF domain
PRINTSPR003675.4E-13121141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDSSFFSYQT YSQFSPESSS SFSSLESFCS QPLPYNENDS EEMFLFGVLN EAPTFSANMN  60
YSEVNSADSN NYQDEPIQEI AYRGVRKRPW GKYAAEIRDS TRNGVRVWLG TFDKAEDAAL  120
AYDQAALAMR GSTAILNFPI EKVYESLQEM KYEFQEGYSP VLELKKRHSM KRKAESKKKK  180
GKEDMRMENV VVLEDLGAEY LEELLTISEN ATSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2882140361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164179KKRHSMKRKAESKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089315.11e-158PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC81e-71ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A067JIM61e-158A0A067JIM6_JATCU; Uncharacterized protein
STRINGPOPTR_0013s04240.13e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-57ethylene response factor 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]